PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG067900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 478aa    MW: 53105.7 Da    PI: 4.5378
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG067900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2123.1e-651114752374
                 GRAS   2 velLlecAeavssgdlelaqalLarlsel.....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                           +lLl+ Aeav++gd  la+ + ++l e+      + +++++ Rla +f ++L++r+++      +++p+   ++ ++s +++++++ +e
  Pavir.8KG067900.1.p 111 SDLLLTGAEAVEDGDSGLASVVFSKLDEIlpftfENAAASSFDRLAYHFFQGLQSRMSG------ASFPCYLPEP-EQSGTMSVHQMIQE 193
                          689*************************987776677779*******************......6666666654.4566779999**** PP

                 GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetger.LakfAeelgvp 175
                          +sP++kf+h+taNqaIl+a++g+  vHiiDf++s+G+QW +L+  La +  g  s+ +T++    +++++++++t+ r La+fAe+l++p
  Pavir.8KG067900.1.p 194 LSPFVKFTHFTANQAILDATSGDMDVHIIDFNLSEGIQWSSLMSDLARQ--GGKSFHLTAILVDPADDSNNTHHTATRcLAEFAESLNLP 281
                          ***********************************************85..5579999**9776666555555555444*********** PP

                 GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.......adhnsesFlerfl 258
                          f+++ l +++ edl  e+++ + + +++V++     +l  +s s  +    +L++vk+l+Pk+vv++e+e       ++++++sF+e f+
  Pavir.8KG067900.1.p 282 FQYSSLCMHNKEDL--EDFSRNCEGSIVVSCDT--TNLCYKSCSKLQ--MLLLSCVKNLQPKLVVIIEEElvrigkeVSTTHSSFVEFFF 365
                          *****988877777..999999999******98..455544444444..79*****************996555544566667******* PP

                 GRAS 259 ealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                          eal++++++f+sl++ +++ +     + vEr ++g++i++ v +  +   +         +     GF +  ls  + +qa++l+  ++ 
  Pavir.8KG067900.1.p 366 EALHHFTMVFESLASCFSTSNnsVCLTLVERGMVGPKIQDFVGQYRSV--ALGVPP---PQY--LEGFMSSDLSACNIAQARMLVGLFN- 447
                          *************988776664467899**************988776..333333...333..45***********************. PP

                 GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374
                          + + v +e+g l l+Wk+rpL+svS+W+
  Pavir.8KG067900.1.p 448 RSFGVTHEKGRLQLCWKSRPLISVSVWT 475
                          66*************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.97784456IPR005202Transcription factor GRAS
PfamPF035141.1E-62111475IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
METMSYPCSP LLSFPIHEES SYSLWSPQLA HHENSSIDSS NTHGHENSSA FPYFREDCEF  60
FDTTAIDSSD THGQNAFHVD VFTHCPERLL QQESGNLVTI QEELMEENSL SDLLLTGAEA  120
VEDGDSGLAS VVFSKLDEIL PFTFENAAAS SFDRLAYHFF QGLQSRMSGA SFPCYLPEPE  180
QSGTMSVHQM IQELSPFVKF THFTANQAIL DATSGDMDVH IIDFNLSEGI QWSSLMSDLA  240
RQGGKSFHLT AILVDPADDS NNTHHTATRC LAEFAESLNL PFQYSSLCMH NKEDLEDFSR  300
NCEGSIVVSC DTTNLCYKSC SKLQMLLLSC VKNLQPKLVV IIEEELVRIG KEVSTTHSSF  360
VEFFFEALHH FTMVFESLAS CFSTSNNSVC LTLVERGMVG PKIQDFVGQY RSVALGVPPP  420
QYLEGFMSSD LSACNIAQAR MLVGLFNRSF GVTHEKGRLQ LCWKSRPLIS VSVWTPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-2415347441374GRAS family transcription factor containing p
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.299040.0root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980190.20.0PREDICTED: uncharacterized protein LOC101766196
TrEMBLC5Y5600.0C5Y560_SORBI; Putative uncharacterized protein Sb05g003820
STRINGSb05g003820.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76843250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-40GRAS family protein